Summary

Original source:
http://www.sciencedaily.com/releases/2005/02/050223135535.htm

Details

• Something about nature loves a helix, the ubiquitous spiral shape taken on by DNA and many other molecules found in the cells of living creatures.
• The shape is so useful that, while researching the means of creating self-assembling artificial helices, physicists at the University of Pennsylvania believe that they have come across a plausible mathematical reason for why the helical shape is so common.
• In the dense environment of the cell, long molecular chains frequently adopt ordered helical conformations.
• Not only does this enable information to be tightly packed, as in DNA, but it also forms a surface that allows molecules, such as the machines that enable DNA transcription and repair, to grapple on to it at regular intervals.
• To picture how space matters to the formation of helices, Kamien and graduate student Yehuda Snir envisioned the system as a flexible, unbreakable tube immersed in a mixture of hard spheres, analogous to a molecule in a very crowded cell.
• They find that the best shape for the short flexible tube -- the conformation that takes the least amount of energy and takes up the least space -- is that of a helix with a geometry close to that found in natural helices.
• "It would seem that the success of the helix as a shape in biological molecules is a case of nature working the best it can with the constraints at hand," Kamien said.
• "The spiral shape of DNA is dictated by the space available in a cell much like the way the shape of a spiral staircase is dictated by the size of an apartment."

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